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    MIR663AHG MIR663A host gene [ Homo sapiens (human) ]

    Gene ID: 284801, updated on 10-Oct-2023

    Summary

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    Official Symbol
    MIR663AHGprovided by HGNC
    Official Full Name
    MIR663A host geneprovided by HGNC
    Primary source
    HGNC:HGNC:27662
    See related
    Ensembl:ENSG00000227195 AllianceGenome:HGNC:27662
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 13.0) See more
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    Genomic context

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    Location:
    20p11.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (26187019..26209233, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (26190769..26212983, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (26167655..26189869, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26141485-26142120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26188387-26188888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:26189772-26190332 Neighboring gene family with sequence similarity 182 member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26214685-26215184 Neighboring gene uncharacterized LOC124904967 Neighboring gene BSND pseudogene 3 Neighboring gene NCOR1 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr20:26280570-26281071 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313298-26313875 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313876-26314454 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26314455-26315031 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26318213-26318766 Neighboring gene microRNA 663a Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17681 Neighboring gene FSHD region gene 1 family member C, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. Rajpathak SN, et al. PLoS One, 2014. PMID 24932682, Free PMC Article
    2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • MIR663A host gene (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040095.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL121904, BC036544
      Related
      ENST00000427348.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      26187019..26209233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      26190769..26212983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials